L2L Microarray Analysis Tool

Results summary	View all lists in GO:CellComp	View all genes in R06AX.profile.d50

List Name	Description	Total probes	Expected matches	Actual matches	Fold Enrichment	Binomial p-value
mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	984	2.43	17	6.99	9.40e-10
mitochondrial part	Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	435	1.08	8	7.44	1.63e-05
mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation.	112	0.28	4	14.45	1.87e-04
mitochondrial lumen	The volume enclosed by the mitochondrial inner membrane.	112	0.28	4	14.45	1.87e-04
cytoplasmic part	Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.	3772	9.32	22	2.36	2.76e-04
intracellular membrane-bound organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.	7804	19.29	36	1.87	4.22e-04
membrane-bound organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.	7809	19.30	36	1.86	4.26e-04
mitochondrial inner membrane	The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.	253	0.63	5	7.99	4.61e-04
replisome	A multi-component enzymatic machine at the replication fork which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins.	13	0.03	2	62.24	4.68e-04
nuclear replisome	A multi-component enzymatic machine at the nuclear replication fork, which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins.	13	0.03	2	62.24	4.68e-04
cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.	5577	13.79	28	2.03	4.96e-04
organelle inner membrane	The inner, i.e. lumen-facing, lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites.	266	0.66	5	7.60	5.78e-04
nuclear replication fork	The Y-shaped region of a nuclear replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.	16	0.04	2	50.57	7.17e-04
intracellular organelle part	A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.	3292	8.14	19	2.33	7.78e-04
organelle part	Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.	3305	8.17	19	2.33	8.15e-04
mitochondrial membrane	Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.	308	0.76	5	6.57	1.11e-03
nuclear chromosome part	Any constituent part of a nuclear chromosome, a chromosome found in the nucleus of a eukaryotic cell.	86	0.21	3	14.11	1.33e-03
mitochondrial envelope	The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.	339	0.84	5	5.97	1.69e-03
intracellular organelle	Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.	8838	21.85	37	1.69	1.90e-03
organelle	Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.	8844	21.86	37	1.69	1.93e-03
membrane-enclosed lumen	The enclosed volume within a sealed membrane or between two sealed membranes.	945	2.34	8	3.42	2.80e-03
organelle lumen	The volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear membrane lumen.	945	2.34	8	3.42	2.80e-03
organelle envelope	A double membrane structure enclosing an organelle, including two lipid bilayers and the region between them. In some cases, an organelle envelope may have more than two membranes.	560	1.38	6	4.33	2.98e-03
envelope	A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer, also includes the space between layers.	562	1.39	6	4.32	3.04e-03
ribonucleoprotein complex	A macromolecular complex containing both protein and RNA molecules.	574	1.42	6	4.23	3.36e-03
nuclear chromosome	A chromosome found in the nucleus of a eukaryotic cell.	127	0.31	3	9.56	4.01e-03
replication fork	The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.	42	0.10	2	19.26	4.93e-03
macromolecular complex	A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which the constituent parts function together.	2816	6.96	15	2.15	5.39e-03
nuclear part	Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.	1318	3.26	9	2.76	6.32e-03
intracellular part	Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.	10196	25.20	39	1.55	6.39e-03
intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.	10805	26.71	40	1.50	9.59e-03

mitochondrion

A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

984

2.43

17

6.99

9.40e-10

mitochondrial part

Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

435

1.08

8

7.44

1.63e-05

mitochondrial matrix

The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation.

112

0.28

4

14.45

1.87e-04

mitochondrial lumen

The volume enclosed by the mitochondrial inner membrane.

112

0.28

4

14.45

1.87e-04

cytoplasmic part

Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

3772

9.32

22

2.36

2.76e-04

intracellular membrane-bound organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

7804

19.29

36

1.87

4.22e-04

membrane-bound organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

7809

19.30

36

1.86

4.26e-04

mitochondrial inner membrane

The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.

253

0.63

5

7.99

4.61e-04

replisome

A multi-component enzymatic machine at the replication fork which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins.

13

0.03

2

62.24

4.68e-04

nuclear replisome

A multi-component enzymatic machine at the nuclear replication fork, which mediates DNA replication. Includes DNA primase, one or more DNA polymerases, DNA helicases, and other proteins.

13

0.03

2

62.24

4.68e-04

cytoplasm

All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

5577

13.79

28

2.03

4.96e-04

organelle inner membrane

The inner, i.e. lumen-facing, lipid bilayer of an organelle envelope; usually highly selective to most ions and metabolites.

266

0.66

5

7.60

5.78e-04

nuclear replication fork

The Y-shaped region of a nuclear replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.

16

0.04

2

50.57

7.17e-04

intracellular organelle part

A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.

3292

8.14

19

2.33

7.78e-04

organelle part

Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.

3305

8.17

19

2.33

8.15e-04

mitochondrial membrane

Either of the lipid bilayers that surround the mitochondrion and form the mitochondrial envelope.

308

0.76

5

6.57

1.11e-03

nuclear chromosome part

Any constituent part of a nuclear chromosome, a chromosome found in the nucleus of a eukaryotic cell.

86

0.21

3

14.11

1.33e-03

mitochondrial envelope

The double lipid bilayer enclosing the mitochondrion and separating its contents from the cell cytoplasm; includes the intermembrane space.

339

0.84

5

5.97

1.69e-03

intracellular organelle

Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

8838

21.85

37

1.69

1.90e-03

organelle

Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.

8844

21.86

37

1.69

1.93e-03

membrane-enclosed lumen

The enclosed volume within a sealed membrane or between two sealed membranes.

945

2.34

8

3.42

2.80e-03

organelle lumen

The volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear membrane lumen.

945

2.34

8

3.42

2.80e-03

organelle envelope

A double membrane structure enclosing an organelle, including two lipid bilayers and the region between them. In some cases, an organelle envelope may have more than two membranes.

560

1.38

6

4.33

2.98e-03

envelope

A multilayered structure surrounding all or part of a cell; encompasses one or more lipid bilayers, and may include a cell wall layer, also includes the space between layers.

562

1.39

6

4.32

3.04e-03

ribonucleoprotein complex

A macromolecular complex containing both protein and RNA molecules.

574

1.42

6

4.23

3.36e-03

nuclear chromosome

A chromosome found in the nucleus of a eukaryotic cell.

127

0.31

3

9.56

4.01e-03

replication fork

The Y-shaped region of a replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.

42

0.10

2

19.26

4.93e-03

macromolecular complex

A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which the constituent parts function together.

2816

6.96

15

2.15

5.39e-03

nuclear part

Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.

1318

3.26

9

2.76

6.32e-03

intracellular part

Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

10196

25.20

39

1.55

6.39e-03

intracellular

The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

10805

26.71

40

1.50

9.59e-03

Results for R06AX.profile.d50