L2L Microarray Analysis Tool

Results summary	View all lists in GO:CellComp	View all genes in R06A.profile.ud50

List Name	Description	Total probes	Expected matches	Actual matches	Fold Enrichment	Binomial p-value
ER to Golgi transport vesicle membrane	The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.	15	0.07	4	53.94	7.81e-07
COPII vesicle coat	One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.	15	0.07	4	53.94	7.81e-07
ER to Golgi transport vesicle	A vesicle that mediates transport from the endoplasmic reticulum to the Golgi complex; bears a coat formed of the COPII coat complex proteins; such vesicles found associated with endoplasmic reticulum (ER) membranes at steady state, and are involved in ER to Golgi (anterograde) vesicle transport.	19	0.09	4	42.58	2.18e-06
transport vesicle membrane	The lipid bilayer surrounding a transport vesicle.	47	0.23	5	21.52	3.81e-06
Golgi-associated vesicle membrane	The lipid bilayer surrounding a vesicle associated with the Golgi apparatus.	49	0.24	5	20.64	4.70e-06
Golgi-associated vesicle	Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell.	88	0.44	5	11.49	8.23e-05
vesicle coat	A membrane coat found on a coated vesicle.	88	0.44	5	11.49	8.23e-05
transport vesicle	Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell.	90	0.44	5	11.24	9.16e-05
membrane coat	Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.	91	0.45	5	11.11	9.65e-05
coated membrane	A single or double lipid bilayer with any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes.	91	0.45	5	11.11	9.65e-05
coated vesicle membrane	The lipid bilayer surrounding a coated vesicle.	95	0.47	5	10.65	1.18e-04
cytoplasmic vesicle membrane	The lipid bilayer surrounding a cytoplasmic vesicle.	124	0.61	5	8.16	4.08e-04
cytoplasmic vesicle part	Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell.	132	0.65	5	7.66	5.43e-04
intracellular organelle part	A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.	3292	16.28	31	1.90	7.19e-04
organelle part	Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.	3305	16.34	31	1.90	7.64e-04
vesicle membrane	The lipid bilayer surrounding any membrane-bounded vesicle in the cell.	146	0.72	5	6.93	8.56e-04
nuclear chromatin	The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus.	38	0.19	3	15.97	8.96e-04
nuclear chromosome part	Any constituent part of a nuclear chromosome, a chromosome found in the nucleus of a eukaryotic cell.	86	0.43	4	9.41	9.19e-04
membrane-enclosed lumen	The enclosed volume within a sealed membrane or between two sealed membranes.	945	4.67	13	2.78	1.08e-03
organelle lumen	The volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear membrane lumen.	945	4.67	13	2.78	1.08e-03
nuclear part	Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.	1318	6.52	16	2.46	1.15e-03
coated vesicle	Small membrane-bounded organelle formed by pinching off of a coated region of membrane. Some coats are made of clathrin, whereas others are made from other proteins.	184	0.91	5	5.50	2.37e-03
mitochondrial matrix	The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation.	112	0.55	4	7.22	2.43e-03
mitochondrial lumen	The volume enclosed by the mitochondrial inner membrane.	112	0.55	4	7.22	2.43e-03
Golgi membrane	The lipid bilayer surrounding any of the compartments of the Golgi apparatus.	188	0.93	5	5.38	2.60e-03
intracellular membrane-bound organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.	7804	38.58	57	1.48	3.18e-03
membrane-bound organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.	7809	38.61	57	1.48	3.22e-03
nuclear chromosome	A chromosome found in the nucleus of a eukaryotic cell.	127	0.63	4	6.37	3.81e-03
mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	984	4.86	12	2.47	4.32e-03
mitochondrial part	Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.	435	2.15	7	3.25	6.48e-03

The lipid bilayer surrounding a vesicle transporting substances from the endoplasmic reticulum to the Golgi.

15

0.07

53.94

7.81e-07

One of two multimeric complexes that forms a membrane vesicle coat. COPII is best characterized in S. cerevisiae, where the subunits are called Sar1p, Sec13p, Sec31p, Sec23p, and Sec24p. Vesicles with COPII coats are found associated with endoplasmic reticulum (ER) membranes at steady state.

15

0.07

4

53.94

7.81e-07

ER to Golgi transport vesicle

A vesicle that mediates transport from the endoplasmic reticulum to the Golgi complex; bears a coat formed of the COPII coat complex proteins; such vesicles found associated with endoplasmic reticulum (ER) membranes at steady state, and are involved in ER to Golgi (anterograde) vesicle transport.

19

0.09

4

42.58

2.18e-06

transport vesicle membrane

The lipid bilayer surrounding a transport vesicle.

47

0.23

5

21.52

3.81e-06

Golgi-associated vesicle membrane

The lipid bilayer surrounding a vesicle associated with the Golgi apparatus.

49

0.24

5

20.64

4.70e-06

Golgi-associated vesicle

Any vesicle associated with the Golgi complex and involved in mediating transport within the Golgi or between the Golgi and other parts of the cell.

88

0.44

5

11.49

8.23e-05

vesicle coat

A membrane coat found on a coated vesicle.

88

0.44

5

11.49

8.23e-05

transport vesicle

Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, and to destinations within or outside the cell.

90

0.44

5

11.24

9.16e-05

membrane coat

Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.

91

0.45

5

11.11

9.65e-05

coated membrane

A single or double lipid bilayer with any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes.

91

0.45

5

11.11

9.65e-05

coated vesicle membrane

The lipid bilayer surrounding a coated vesicle.

95

0.47

5

10.65

1.18e-04

cytoplasmic vesicle membrane

The lipid bilayer surrounding a cytoplasmic vesicle.

124

0.61

5

8.16

4.08e-04

cytoplasmic vesicle part

Any constituent part of cytoplasmic vesicle, a vesicle formed of membrane or protein, found in the cytoplasm of a cell.

132

0.65

5

7.66

5.43e-04

intracellular organelle part

A constituent part of an intracellular organelle, an organized structure of distinctive morphology and function, occurring within the cell. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton but excludes the plasma membrane.

3292

16.28

31

1.90

7.19e-04

organelle part

Any constituent part of an organelle, an organized structure of distinctive morphology and function. Includes constituent parts of the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, but excludes the plasma membrane.

3305

16.34

31

1.90

7.64e-04

vesicle membrane

The lipid bilayer surrounding any membrane-bounded vesicle in the cell.

146

0.72

5

6.93

8.56e-04

nuclear chromatin

The ordered and organized complex of DNA and protein that forms the chromosome in the nucleus.

38

0.19

3

15.97

8.96e-04

nuclear chromosome part

Any constituent part of a nuclear chromosome, a chromosome found in the nucleus of a eukaryotic cell.

86

0.43

4

9.41

9.19e-04

membrane-enclosed lumen

The enclosed volume within a sealed membrane or between two sealed membranes.

945

4.67

13

2.78

1.08e-03

organelle lumen

The volume enclosed by the membranes of a particular organelle, e.g. endoplasmic reticulum lumen, or the space between the two lipid bilayers of a double membrane surrounding an organelle, e.g. nuclear membrane lumen.

945

4.67

13

2.78

1.08e-03

nuclear part

Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.

1318

6.52

16

2.46

1.15e-03

coated vesicle

Small membrane-bounded organelle formed by pinching off of a coated region of membrane. Some coats are made of clathrin, whereas others are made from other proteins.

184

0.91

5

5.50

2.37e-03

mitochondrial matrix

The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty-acid oxidation.

112

0.55

4

7.22

2.43e-03

mitochondrial lumen

The volume enclosed by the mitochondrial inner membrane.

112

0.55

4

7.22

2.43e-03

Golgi membrane

The lipid bilayer surrounding any of the compartments of the Golgi apparatus.

188

0.93

5

5.38

2.60e-03

intracellular membrane-bound organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

7804

38.58

57

1.48

3.18e-03

membrane-bound organelle

Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.

7809

38.61

57

1.48

3.22e-03

nuclear chromosome

A chromosome found in the nucleus of a eukaryotic cell.

127

0.63

4

6.37

3.81e-03

mitochondrion

A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

984

4.86

12

2.47

4.32e-03

mitochondrial part

Any constituent part of a mitochondrion, a semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

435

2.15

7

3.25

6.48e-03

Results for R06A.profile.ud50